PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID estExt_gwp_GeneWisePlus.C_Chr_02.00010270
Common NameE2F
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Mamiellales; Bathycoccaceae; Ostreococcus
Family E2F/DP
Protein Properties Length: 313aa    MW: 34684.4 Da    PI: 7.3882
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
estExt_gwp_GeneWisePlus.C_Chr_02.00010270genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP65.95.4e-213391467
                                    E2F_TDP  4 ksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkeknei 67
                                               +sL++l+ kf+kll+++e+gi++ln++a++L   +   ++RR+YDi+NVLe+++l++k +k+++
  estExt_gwp_GeneWisePlus.C_Chr_02.00010270 33 SSLGVLSAKFMKLLSETENGILDLNHAATSL---SA--QKRRVYDITNVLEGIGLVSKLSKSKV 91
                                               79*****************************...77..********************999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013726.1E-243095IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.2E-203191IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023195.0E-193391IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467859.66E-133390IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000902Biological Processcell morphogenesis
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042023Biological ProcessDNA endoreduplication
GO:0051782Biological Processnegative regulation of cell division
GO:0005667Cellular Componenttranscription factor complex
GO:0005730Cellular Componentnucleolus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MVEKHVLSSK RSLGRFERYA RAHCLNSADT SCSSLGVLSA KFMKLLSETE NGILDLNHAA  60
TSLSAQKRRV YDITNVLEGI GLVSKLSKSK VALRRVDEDF VETTSGQHKE HKSLSRTVNI  120
ESSQTLPLAS EDDASLHIET IRSFIRSTGI FISQADIIEQ HALSSDMLIA VRAPTGAALL  180
LPSPFTQERS PPHYRLFLRS NENSSAGVEV FTLGRRSGTC DAHDVIQILN GFSSLCREAQ  240
RAVWLLNSCD VLYFDINKDH VPVSFATILE FDNVHHNVTL IRQLPTFFLG VLFCHFLQVG  300
NVFGTYSQGE KF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_A8e-1634961174PROTEIN (TRANSCRIPTION FACTOR E2F-4)
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00190DAPTransfer from AT1G47870Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY6751030.0AY675103.1 Ostreococcus tauri transcription factor E2F (E2F) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003074966.11e-148transcription factor E2F (IC)
TrEMBLQ5SCB10.0Q5SCB1_
STRINGQ5SCB10.0(Ostreococcus tauri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP32581314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47870.23e-27E2F/DP family protein
Publications ? help Back to Top
  1. Robbens S, et al.
    Genome-wide analysis of core cell cycle genes in the unicellular green alga Ostreococcus tauri.
    Mol. Biol. Evol., 2005. 22(3): p. 589-97
    [PMID:15537805]